WGCNA debug
net = blockwiseModules(datExpr, power = sft$powerEstimate,
maxBlockSize = 6000,TOMType = "unsigned",
minModuleSize = 30,reassignThreshold = 0, mergeCutHeight = 0.25,
numericLabels = TRUE, pamRespectsDendro = FALSE,
saveTOMs = TRUE,
saveTOMFileBase = "AS-green-FPKM-TOM",
verbose = 3)
運(yùn)行到這里報(bào)錯(cuò):
Error in (new("standardGeneric", .Data = function (x, y = NULL, use = "everything", :
unused arguments (weights.x = NULL, weights.y = NULL, cosine = FALSE)
已解決,這里面涉及超多問題,發(fā)現(xiàn)很多人都遇到這個(gè),是WGCNA包與其他函數(shù)沖突導(dǎo)致的;
輸入
cor <- WGCNA::cor
暫時(shí)分配功能
再運(yùn)行
blockwiseModules
后面再調(diào)回來
cor<-stats::cor
天天都在和bug作斗爭(zhēng),浪費(fèi)時(shí)間啊哎